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AgeCommit message (Expand)Author
2025-08-27biology/gatk: update 4.6.1.0 → 4.6.2.0Yuri Victorovich
2025-02-14biology/gatk: Update WWWYuri Victorovich
2025-02-06biology/gatk: Fix build breakage after gradle update to 8.12.1Yuri Victorovich
2024-12-31Mk/**java.mk: Convert bsd.java.mk to USESMuhammad Moinur Rahman
2024-11-01biology/gatk: Update TEST_ENVYuri Victorovich
2024-10-31biology/gatk: Update tests stats; Add dependencyYuri Victorovich
2024-10-31biology/gatk: update 4.6.0.0 → 4.6.1.0Yuri Victorovich
2024-08-04biology/gatk: Update COMMENTYuri Victorovich
2024-08-04biology/gatk: Add dependencies biology/fermi-lite and biology/gkl; Add python...Yuri Victorovich
2024-07-20biology/gatk: Fix fetchYuri Victorovich
2024-07-14biology/gatk: Fix fetchYuri Victorovich
2024-07-13biology/gatk: Prevent execution of git hooks from $DISTDIR during fetchYuri Victorovich
2024-07-11biology/gatk: update 4.5.0.0 → 4.6.0.0Yuri Victorovich
2024-02-18*/*: Replace format=bsdtar with format=ustar in tar archive operationsYuri Victorovich
2023-12-31*/*: Sunset 12.4-RELEASE/12-STABLE from ports treeMuhammad Moinur Rahman
2023-12-18biology/gatk: update 4.4.0.0 → 4.5.0.0Yuri Victorovich
2023-06-04biology/gatk: Update 4.3.0.0 → 4.4.0.0Yuri Victorovich
2022-11-26biology/gatk: Update 4.2.6.1 -> 4.3.0.0Yuri Victorovich
2022-09-07Remove WWW entries moved into port MakefilesStefan Eßer
2022-09-07Add WWW entries to port MakefilesStefan Eßer
2022-08-11biology/gatk: mark BROKENDmitry Marakasov
2022-05-24biology/gatk: Use Java 17 instead of EOLed Java 12Yuri Victorovich
2022-05-22biology/gatk: Update 4.2.6.0 -> 4.2.6.1Yuri Victorovich
2022-04-10biology/gatk: Update 4.2.0.0 -> 4.2.6.0Yuri Victorovich
2021-04-07One more small cleanup, forgotten yesterday.Mathieu Arnold
2021-04-06Remove # $FreeBSD$ from Makefiles.Mathieu Arnold
2021-03-13biology/gatk: Fix fetchYuri Victorovich
2021-03-12biology/gatk: Update 4.1.9.0 -> 4.2.0.0Yuri Victorovich
2021-01-22biology/gatk: Add the WITH_LARGE_FILES option.Yuri Victorovich
2021-01-21biology/gatk: Update 4.1.8.1 -> 4.1.9.0Yuri Victorovich
2020-09-08biology/gatk: Fix buildYuri Victorovich
2020-09-06biology/gatk: Update 4.1.8.0 -> 4.1.8.1Yuri Victorovich
2020-07-09biology/gatk: Update 4.1.7.0 -> 4.1.8.0Yuri Victorovich
2020-05-28biology/gatk: Update 4.1.5.0 -> 4.1.7.0Yuri Victorovich
2020-05-26Mark as BROKEN on powerpc64 12. It builds on -head.Mark Linimon
2020-05-06Preserve Gradle 6.2.2 for biology/gatkTobias Kortkamp
2020-03-04biology/gatk: Update 4.1.4.1 -> 4.1.5.0Yuri Victorovich
2020-02-09biology/gatk: Change from gradle5 to gradle6Yuri Victorovich
2020-01-20biology/gatk: Update 4.1.3.0 -> 4.1.4.1Yuri Victorovich
2020-01-05biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich
2019-11-20Create devel/gradle5 in preparation of devel/gradle updateTobias Kortkamp
2019-07-26biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich
2019-07-23Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp
2018-12-04devel/gradle: Update to 5.0Yuri Victorovich
2018-12-03biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich
2018-12-03biology/gatk: Correct the targetYuri Victorovich
2018-12-03New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich
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