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2025-06-23biology/py-orange3-bioinformatics: Remove expired portRene Ladan
2025-06-23biology/py-orange3-single-cell: Remove expired portRene Ladan
2025-06-13*/Makefile: Sort SUBDIRsPo-Chuan Hsieh
2025-06-11biology/py-pydeseq2: Python reimplementation of the DESeq2 R packageJason W. Bacon
2025-06-02biology/checkm: Remove expired portRene Ladan
2025-04-06biology/fasda-utils: Fast and simple differential analysis extrasJason W. Bacon
2025-01-01biology/ncbi-vdb: Remove expired portRene Ladan
2024-11-22biology/preseq: Predict yield of distinct reads from a genomic libraryJason W. Bacon
2024-10-24biology/mca-calling: Core tools for mCA event callingJason W. Bacon
2024-10-04biology/coverm: New port: Read coverage calculator for metagenomicsYuri Victorovich
2024-09-20biology/fastani: New port: Fast Whole-Genome Similarity (ANI) EstimationYuri Victorovich
2024-09-07biology/andi: New ports: Efficient estimation of evolutionary distancesYuri Victorovich
2024-08-04biology/gkl: New port: Accelerated kernel library for genomicsYuri Victorovich
2024-08-03biology/fermi-lite: New port: Library anf tool for assembling Illumina short ...Yuri Victorovich
2024-05-05biology/pbseqan: Remove expired portRene Ladan
2024-02-03biology/py-newick: Add new portWen Heping
2024-01-18biology/recombine: Remove expired portRene Ladan
2024-01-18biology/seqio: Remove expired portMuhammad Moinur Rahman
2024-01-18biology/sim4: Remove expired portMuhammad Moinur Rahman
2024-01-10biology/py-macs3: Peak caller for TF binding sitesJason W. Bacon
2023-12-15biology/R-cran-Biobase: New portMuhammad Moinur Rahman
2023-12-15biology/R-cran-BiocGenerics: New portMuhammad Moinur Rahman
2023-12-15biology/R-cran-BiocManager: New portMuhammad Moinur Rahman
2023-07-28biology/py-htseq: Python library for sequence analysisJason W. Bacon
2023-07-21biology/salmon: Transcript-level quantification of RNA-seqJason W. Bacon
2023-07-21biology/btllib: New port: Bioinformatics Technology Lab common code libraryYuri Victorovich
2023-07-21biology/seqwish: New port: Assembly By Short Sequences: parallel, paired-end ...Yuri Victorovich
2023-07-16biology/locarna: New port: LocARNA provides several tools for the structural ...Yuri Victorovich
2023-07-10biology/mashmap: New port: Fast approximate aligner for long DNA sequencesYuri Victorovich
2023-07-07biology/bifrost: Parallel tool for de Bruijn graphsJason W. Bacon
2023-06-14biology/chip-seq: Metaport for ChIP-Seq analysisJason W. Bacon
2023-02-25biology/bcf-score: Bcftools plugins for GWAS-VCF summary statisticsJason W. Bacon
2023-01-30biology/wfa2-lib: Exact gap-affine algorithm using homologyJason W. Bacon
2023-01-11biology/atac-seq: Metaport for ATAC-Seq analysisJason W. Bacon
2022-12-30biology/py-biosig: New port: Library for reading and writing different biosig...Yuri Victorovich
2022-12-12biology/rna-seq: Metaport for RNA-Seq analysisJason W. Bacon
2022-12-12biology/fasda: Fast and simple differential analysisJason W. Bacon
2022-12-06biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich
2022-11-26biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich
2022-11-25biology/augustus: New port: Genome annotation toolYuri Victorovich
2022-11-24biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich
2022-11-22biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon
2022-10-21biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich
2022-10-03biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich
2022-08-07biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale ge...Yuri Victorovich
2022-07-06biology/ngs-sdk: Revert: Un-remove, ngs was moved into sra-toolsYuri Victorovich
2022-07-06biology/ngs-sdk: Remove, ngs was moved into sra-toolsYuri Victorovich
2022-06-19biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take maintai...Yuri Victorovich
2022-05-01biology/py-mrcfile: New port: MRC file I/O library which is used in structura...Yuri Victorovich
2022-03-19biology/fastq-trim: Lightening fast sequence read trimmerJason W. Bacon
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