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{
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
setuptools,
# dependencies
numba,
numpy,
pynndescent,
scikit-learn,
scipy,
tqdm,
# optional-dependencies
bokeh,
colorcet,
dask,
datashader,
holoviews,
matplotlib,
pandas,
scikit-image,
seaborn,
tensorflow,
tensorflow-probability,
# tests
pytestCheckHook,
writableTmpDirAsHomeHook,
}:
buildPythonPackage rec {
pname = "umap-learn";
version = "0.5.9.post2";
pyproject = true;
src = fetchFromGitHub {
owner = "lmcinnes";
repo = "umap";
tag = "release-${version}";
hash = "sha256-ollUXPVB07v6DkQ/d1eke0/j1f4Ekfygo1r6CtIRTuk=";
};
build-system = [ setuptools ];
dependencies = [
numba
numpy
pynndescent
scikit-learn
scipy
tqdm
];
optional-dependencies = rec {
plot = [
bokeh
colorcet
dask
datashader
holoviews
matplotlib
pandas
scikit-image
seaborn
];
parametric_umap = [
tensorflow
tensorflow-probability
];
tbb = [
# Not packaged.
#tbb
];
all = plot ++ parametric_umap ++ tbb;
};
nativeCheckInputs = [
pytestCheckHook
writableTmpDirAsHomeHook
];
disabledTests = [
# Plot functionality requires additional packages.
# These test also fail with 'RuntimeError: cannot cache function' error.
"test_plot_runs_at_all"
"test_umap_plot_testability"
"test_umap_update_large"
# Flaky test. Fails with AssertionError sometimes.
"test_sparse_hellinger"
"test_densmap_trustworthiness_on_iris_supervised"
# tensorflow maybe incompatible? https://github.com/lmcinnes/umap/issues/821
"test_save_load"
];
meta = {
description = "Uniform Manifold Approximation and Projection";
homepage = "https://github.com/lmcinnes/umap";
changelog = "https://github.com/lmcinnes/umap/releases/tag/release-${src.tag}";
license = lib.licenses.bsd3;
maintainers = [ ];
};
}
|
