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{
lib,
buildPythonPackage,
fetchFromGitHub,
cython,
numpy,
setuptools,
wheel,
imagecodecs,
matplotlib,
pandas,
pynrrd,
scipy,
sdflit,
seaborn,
tifffile,
tqdm,
typing-extensions,
beautifulsoup4,
certifi,
chardet,
lmdb,
requests,
urllib3,
pytestCheckHook,
}:
let
version = "0.21.2";
in
buildPythonPackage rec {
pname = "swcgeom";
inherit version;
pyproject = true;
src = fetchFromGitHub {
owner = "yzx9";
repo = "swcgeom";
tag = "v${version}";
hash = "sha256-A6N6i7GESMIhG81xXDsNXiM0yBXWGhcdELll79F3Evk=";
};
build-system = [
cython
numpy
setuptools
wheel
];
dependencies = [
imagecodecs
matplotlib
numpy
pandas
pynrrd
scipy
sdflit
seaborn
tifffile
tqdm
typing-extensions
];
optional-dependencies = {
all = [
beautifulsoup4
certifi
chardet
lmdb
requests
urllib3
];
};
pythonImportsCheck = [
"swcgeom"
];
nativeCheckInputs = [
pytestCheckHook
];
preCheck = ''
# make sure import the built version, not the source one
rm -r swcgeom
'';
meta = {
description = "Neuron geometry library for swc format";
homepage = "https://github.com/yzx9/swcgeom";
changelog = "https://github.com/yzx9/swcgeom/blob/${src.tag}/CHANGELOG.md";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ yzx9 ];
};
}
|
