1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
|
{
stdenv,
lib,
buildPythonPackage,
fetchurl,
isPyPy,
R,
rWrapper,
xz,
bzip2,
zlib,
zstd,
icu,
pytestCheckHook,
setuptools,
cffi,
}:
buildPythonPackage rec {
version = "3.6.3";
pyproject = true;
pname = "rpy2-rinterface";
disabled = isPyPy;
src = fetchurl {
url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${
builtins.replaceStrings [ "-" ] [ "_" ] pname
}-${version}.tar.gz";
hash = "sha256-R3vC9R0AetG4VnxdS6GvD1mVFobufxBXagbQg03ld28=";
};
patches = [
# https://github.com/rpy2/rpy2/pull/1171#issuecomment-3263994962
./restore-initr-simple.patch
# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
# This patch sets R_LIBS_SITE when rpy2 is imported.
./rpy2-3.x-r-libs-site.patch
];
postPatch = ''
substituteInPlace 'src/rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
'';
buildInputs = [
xz
bzip2
zlib
zstd
icu
]
++ rWrapper.recommendedPackages;
nativeBuildInputs = [
R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly)
];
propagatedBuildInputs = [
cffi
setuptools
];
nativeCheckInputs = [ pytestCheckHook ];
# https://github.com/rpy2/rpy2/issues/1111
disabledTests = [
"test_parse_incomplete_error"
"test_parse_error"
"test_parse_error_when_evaluting"
];
meta = {
homepage = "https://rpy2.github.io/";
description = "Python interface to R";
license = lib.licenses.gpl2Plus;
platforms = lib.platforms.unix;
teams = with lib.teams; [ sage ];
};
}
|
