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{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
# build-system
cython,
setuptools,
# dependencies
alive-progress,
autograd,
cma,
deprecated,
matplotlib,
moocore,
numpy,
scipy,
# tests
jupytext,
nbformat,
notebook,
numba,
optuna,
pytestCheckHook,
pythonAtLeast,
scikit-learn,
writeText,
}:
let
pymoo_data = fetchFromGitHub {
owner = "anyoptimization";
repo = "pymoo-data";
rev = "8dae7d02078def161ee109184399adc3db25265b";
hash = "sha256-dpuRIMqDQ+oKrvK1VAQxPG6vijZMxT6MB8xOswPwv5o=";
};
in
buildPythonPackage rec {
pname = "pymoo";
version = "0.6.1.6";
pyproject = true;
src = fetchFromGitHub {
owner = "anyoptimization";
repo = "pymoo";
tag = version;
hash = "sha256-tLkXH0Ig/yWZbaFwzsdIdmbnlNd9UAruVSziaL3iW4U=";
};
postPatch = ''
substituteInPlace pymoo/util/display/display.py \
--replace-fail "from pymoo.util.display.progress import ProgressBar" "" \
--replace-fail \
"ProgressBar() if progress else None" \
"print('Missing alive_progress needed for progress=True!') if progress else None"
substituteInPlace pymoo/config.py \
--replace-fail \
"https://raw.githubusercontent.com/anyoptimization/pymoo-data/main/" \
"file://${pymoo_data}/"
'';
pythonRemoveDeps = [ "alive-progress" ];
build-system = [
setuptools
cython
];
dependencies = [
alive-progress
autograd
cma
deprecated
matplotlib
moocore
numpy
scipy
];
nativeCheckInputs = [
jupytext
nbformat
notebook
numba
optuna
pytestCheckHook
scikit-learn
];
# Select some lightweight tests
disabledTestMarks = [ "long" ];
disabledTests = [
# ModuleNotFoundError: No module named 'pymoo.cython.non_dominated_sorting'
"test_fast_non_dominated_sorting"
"test_efficient_non_dominated_sort"
"test_dominance_degree_non_dominated_sort"
# sensitive to float precision
"test_cd_and_pcd"
# AssertionError:
# Not equal to tolerance rtol=0, atol=0.0001
# Mismatched elements: 1200 / 1200 (100%)
"test_pf"
# TypeError: 'NoneType' object is not subscriptable
"test_dascomp"
"test_mw"
]
++ lib.optionals (pythonAtLeast "3.13") [
# AttributeError: 'ZDT3' object has no attribute 'elementwise'
"test_kktpm_correctness"
];
disabledTestPaths = [
# sensitive to float precision
"tests/algorithms/test_no_modfication.py"
]
++ lib.optionals stdenv.hostPlatform.isDarwin [
# sensitive to float precision
"tests/misc/test_kktpm.py::test_kktpm_correctness[zdt3-params3]"
];
# Avoid crashing sandboxed build on macOS
env.MATPLOTLIBRC = writeText "" ''
backend: Agg
'';
pythonImportsCheck = [ "pymoo" ];
meta = {
description = "Multi-objective Optimization in Python";
homepage = "https://pymoo.org/";
downloadPage = "https://github.com/anyoptimization/pymoo";
changelog = "https://github.com/anyoptimization/pymoo/releases/tag/${src.tag}";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ veprbl ];
};
}
|
