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{
lib,
stdenv,
buildPythonPackage,
click,
cython,
distutils,
fetchFromGitHub,
gcc,
pytestCheckHook,
setuptools,
}:
buildPythonPackage (finalAttrs: {
pname = "primer3";
version = "2.3.0";
pyproject = true;
src = fetchFromGitHub {
owner = "libnano";
repo = "primer3-py";
tag = "v${finalAttrs.version}";
hash = "sha256-HL/kFpz5xvFDKgef2+AI/qjs2jakl00qfPSABYMGyrI=";
};
build-system = [
distutils
setuptools
];
nativeBuildInputs = [ cython ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ gcc ];
nativeCheckInputs = [
click
pytestCheckHook
];
# We are not sure why exactly this is need. It seems `pytestCheckHook`
# doesn't find extension modules installed in $out/${python.sitePackages},
# and the tests rely upon them. This was initially reported upstream at
# https://github.com/libnano/primer3-py/issues/120 and we investigate this
# downstream at: https://github.com/NixOS/nixpkgs/issues/255262.
preCheck = ''
python setup.py build_ext --inplace
'';
pythonImportsCheck = [ "primer3" ];
meta = {
description = "Oligo analysis and primer design";
homepage = "https://github.com/libnano/primer3-py";
changelog = "https://github.com/libnano/primer3-py/blob/${finalAttrs.src.tag}/CHANGES";
license = lib.licenses.gpl2Only;
maintainers = with lib.maintainers; [ fab ];
};
})
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