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{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
# build-system
oldest-supported-numpy,
setuptools,
# nativeBuildInputs
copyDesktopItems,
cython,
qt5,
recommonmark,
sphinx,
# dependencies
baycomp,
bottleneck,
catboost,
chardet,
httpx,
joblib,
keyring,
keyrings-alt,
matplotlib,
numpy,
openpyxl,
opentsne,
orange-canvas-core,
orange-widget-base,
pandas,
pip,
pyqt5,
pyqtgraph,
pyqtwebengine,
python-louvain,
pyyaml,
qtconsole,
requests,
scikit-learn,
scipy,
serverfiles,
xgboost,
xlrd,
xlsxwriter,
makeDesktopItem,
# passthru
gitUpdater,
python,
pytest-qt,
pytestCheckHook,
}:
let
self = buildPythonPackage rec {
pname = "orange3";
version = "3.39.0";
pyproject = true;
src = fetchFromGitHub {
owner = "biolab";
repo = "orange3";
tag = version;
hash = "sha256-P2e3Wq33UXnTmGSxkoW8kYYCBfYBB9Z50v4g7n//Fbw=";
};
build-system = [
oldest-supported-numpy
setuptools
];
postPatch = ''
substituteInPlace pyproject.toml \
--replace-fail 'cython>=3.0' 'cython'
# disable update checking
echo -e "def check_for_updates():\n\tpass" >> Orange/canvas/__main__.py
'';
nativeBuildInputs = [
copyDesktopItems
cython
qt5.wrapQtAppsHook
recommonmark
sphinx
];
enableParallelBuilding = true;
pythonRelaxDeps = [ "scikit-learn" ];
dependencies = [
baycomp
bottleneck
catboost
chardet
httpx
joblib
keyring
keyrings-alt
matplotlib
numpy
openpyxl
opentsne
orange-canvas-core
orange-widget-base
pandas
pip
pyqt5
pyqtgraph
pyqtwebengine
python-louvain
pyyaml
qtconsole
requests
scikit-learn
scipy
serverfiles
setuptools
xgboost
xlrd
xlsxwriter
];
# FIXME: ImportError: cannot import name '_variable' from partially initialized module 'Orange.data' (most likely due to a circular import) (/build/source/Orange/data/__init__.py)
doCheck = false;
# FIXME: pythonRelaxDeps is not relaxing the scikit-learn version constraint, had to disable this
dontCheckRuntimeDeps = true;
pythonImportsCheck = [
"Orange"
"Orange.data._variable"
];
desktopItems = [
(makeDesktopItem {
name = "orange";
exec = "orange-canvas";
desktopName = "Orange Data Mining";
genericName = "Data Mining Suite";
comment = "Explore, analyze, and visualize your data";
icon = "orange-canvas";
mimeTypes = [ "application/x-extension-ows" ];
categories = [
"Science"
"Education"
"ArtificialIntelligence"
"DataVisualization"
"NumericalAnalysis"
"Qt"
];
keywords = [
"Machine Learning"
"Scientific Visualization"
"Statistical Analysis"
];
})
];
postInstall = ''
wrapProgram $out/bin/orange-canvas \
"${"$"}{qtWrapperArgs[@]}"
mkdir -p $out/share/icons/hicolor/{256x256,48x48}/apps
cp distribute/icon-256.png $out/share/icons/hicolor/256x256/apps/orange-canvas.png
cp distribute/icon-48.png $out/share/icons/hicolor/48x48/apps/orange-canvas.png
'';
passthru = {
updateScript = gitUpdater { };
tests.unittests = stdenv.mkDerivation {
name = "${self.name}-tests";
inherit (self) src;
preCheck = ''
export HOME=$(mktemp -d)
export QT_PLUGIN_PATH="${qt5.qtbase.bin}/${qt5.qtbase.qtPluginPrefix}"
export QT_QPA_PLATFORM_PLUGIN_PATH="${qt5.qtbase.bin}/lib/qt-${qt5.qtbase.version}/plugins";
export QT_QPA_PLATFORM=offscreen
rm Orange -rf
cp -r ${self}/${python.sitePackages}/Orange .
chmod +w -R .
substituteInPlace Orange/classification/tests/test_xgb_cls.py \
--replace-fail test_learners mk_test_learners
substituteInPlace Orange/modelling/tests/test_xgb.py \
--replace-fail test_learners mk_test_learners
substituteInPlace Orange/**/tests/*.py \
--replace-fail test_filename filename_test
# TODO: debug why orange is crashing on GC, may be a upstream issue
chmod +x Orange/__init__.py
echo "import gc; gc.disable()" | tee -a Orange/__init__.py
'';
nativeBuildInputs = [
pytest-qt
pytestCheckHook
];
postCheck = ''
touch $out
'';
doBuild = false;
doInstall = false;
buildInputs = [ self ];
};
};
meta = {
description = "Data mining and visualization toolbox for novice and expert alike";
homepage = "https://orangedatamining.com/";
changelog = "https://github.com/biolab/orange3/blob/${src.tag}/CHANGELOG.md";
license = [ lib.licenses.gpl3Plus ];
maintainers = [ ];
mainProgram = "orange-canvas";
};
};
in
self
|
