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{
lib,
buildPythonPackage,
fetchFromGitHub,
# build-system
hatch-vcs,
hatchling,
# dependencies
acres,
attrs,
importlib-resources,
jinja2,
looseversion,
matplotlib,
nibabel,
nilearn,
nipype,
nitransforms,
numpy,
packaging,
pandas,
pybids,
pyyaml,
scikit-image,
scipy,
seaborn,
svgutils,
templateflow,
traits,
transforms3d,
# tests
pytest-cov-stub,
pytest-env,
pytestCheckHook,
writableTmpDirAsHomeHook,
}:
buildPythonPackage rec {
pname = "niworkflows";
version = "1.14.4";
pyproject = true;
src = fetchFromGitHub {
owner = "nipreps";
repo = "niworkflows";
tag = version;
hash = "sha256-AMUOiIL33kcJtlKT+L5QwcUh8mBBkf80uzOQZFKDauo=";
};
pythonRelaxDeps = [ "traits" ];
build-system = [
hatch-vcs
hatchling
];
dependencies = [
acres
attrs
importlib-resources
jinja2
looseversion
matplotlib
nibabel
nilearn
nipype
nitransforms
numpy
packaging
pandas
pybids
pyyaml
scikit-image
scipy
seaborn
svgutils
templateflow
traits
transforms3d
];
env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
nativeCheckInputs = [
pytest-cov-stub
pytest-env
pytestCheckHook
writableTmpDirAsHomeHook
];
enabledTestPaths = [ "niworkflows" ];
disabledTests = [
# try to download data:
"ROIsPlot"
"ROIsPlot2"
"niworkflows.interfaces.cifti._prepare_cifti"
"niworkflows.utils.misc.get_template_specs"
"test_GenerateCifti"
"test_SimpleShowMaskRPT"
"test_cifti_surfaces_plot"
"test_brain_extraction_wf_smoketest"
];
disabledTestPaths = [
"niworkflows/tests/test_registration.py"
];
pythonImportsCheck = [ "niworkflows" ];
meta = {
description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
mainProgram = "niworkflows-boldref";
homepage = "https://github.com/nipreps/niworkflows";
changelog = "https://github.com/nipreps/niworkflows/blob/${src.tag}/CHANGES.rst";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
