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{
lib,
buildPythonPackage,
fetchFromGitHub,
hatchling,
dask,
numpy,
python-dateutil,
spatial-image,
xarray,
xarray-dataclass,
zarr,
dask-image,
fsspec,
jsonschema,
nbmake,
pooch,
pytestCheckHook,
pytest-mypy,
urllib3,
}:
buildPythonPackage rec {
pname = "multiscale-spatial-image";
version = "2.0.3";
pyproject = true;
src = fetchFromGitHub {
owner = "spatial-image";
repo = "multiscale-spatial-image";
tag = "v${version}";
hash = "sha256-wKSzhlNXIXOFEK8+xfKF6zTFr0+mdFhhvjWiHAKphk0=";
};
build-system = [ hatchling ];
dependencies = [
dask
numpy
python-dateutil
spatial-image
xarray
xarray-dataclass
zarr
];
optional-dependencies = {
dask-image = [ dask-image ];
#itk = [
# itk-filtering # not in nixpkgs yet
#];
test = [
dask-image
fsspec
#ipfsspec # not in nixpkgs
#itk-filtering # not in nixpkgs
jsonschema
nbmake
pooch
pytest-mypy
urllib3
];
};
nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;
doCheck = false; # all test files try to download data
pythonImportsCheck = [ "multiscale_spatial_image" ];
meta = {
description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";
homepage = "https://github.com/spatial-image/multiscale-spatial-image";
changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
