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|
{
lib,
buildPythonPackage,
fetchFromGitHub,
pythonOlder,
ninja,
numpy,
packaging,
pybind11,
torch,
which,
}:
buildPythonPackage rec {
pname = "monai";
version = "1.5.1";
pyproject = true;
src = fetchFromGitHub {
owner = "Project-MONAI";
repo = "MONAI";
tag = version;
hash = "sha256-GhyUOp/iLpuKKQAwQsA6D7IiW8ym8QTC4OmRxEKydVA=";
# fix source non-reproducibility due to versioneer + git-archive, as with Numba, Pytensor etc. derivations:
postFetch = ''
sed -i 's/git_refnames = "[^"]*"/git_refnames = " (tag: ${src.tag})"/' $out/monai/_version.py
'';
};
preBuild = ''
export MAX_JOBS=$NIX_BUILD_CORES;
'';
build-system = [
ninja
which
];
buildInputs = [ pybind11 ];
dependencies = [
numpy
packaging
torch
];
env.BUILD_MONAI = 1;
doCheck = false; # takes too long; tries to download data
pythonImportsCheck = [
"monai"
"monai.apps"
"monai.data"
"monai.engines"
"monai.handlers"
"monai.inferers"
"monai.losses"
"monai.metrics"
"monai.optimizers"
"monai.networks"
"monai.transforms"
"monai.utils"
"monai.visualize"
];
meta = {
description = "Pytorch framework (based on Ignite) for deep learning in medical imaging";
homepage = "https://github.com/Project-MONAI/MONAI";
changelog = "https://github.com/Project-MONAI/MONAI/releases/tag/${version}";
license = lib.licenses.asl20;
maintainers = [ lib.maintainers.bcdarwin ];
};
}
|
