1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
|
{
lib,
buildPythonPackage,
fetchFromGitHub,
pythonAtLeast,
hatchling,
hatch-vcs,
numpy,
scipy,
flaky,
pandas,
pytestCheckHook,
pytest-cov-stub,
pytest-timeout,
writableTmpDirAsHomeHook,
matplotlib,
decorator,
jinja2,
pooch,
tqdm,
packaging,
lazy-loader,
h5io,
pymatreader,
procps,
optipng,
}:
buildPythonPackage rec {
pname = "mne";
version = "1.11.0";
pyproject = true;
src = fetchFromGitHub {
owner = "mne-tools";
repo = "mne-python";
tag = "v${version}";
hash = "sha256-lssSHlWUj3TU0F/31jTFc+oFdBx1C+9aolee6M8mJtw=";
};
postPatch = ''
substituteInPlace doc/conf.py \
--replace-fail '"optipng"' '"${lib.getExe optipng}"'
substituteInPlace mne/utils/config.py \
--replace-fail '"free"' '"${lib.getExe' procps "free"}"' \
--replace-fail '"sysctl"' '"${lib.getExe' procps "sysctl"}"'
'';
build-system = [
hatchling
hatch-vcs
];
dependencies = [
numpy
scipy
matplotlib
tqdm
pooch
decorator
packaging
jinja2
lazy-loader
];
optional-dependencies.hdf5 = [
h5io
pymatreader
];
nativeCheckInputs = [
flaky
pandas
pytestCheckHook
pytest-cov-stub
pytest-timeout
writableTmpDirAsHomeHook
]
++ lib.concatAttrValues optional-dependencies;
preCheck = ''
export MNE_SKIP_TESTING_DATASET_TESTS=true
export MNE_SKIP_NETWORK_TESTS=1
'';
disabledTests = [
# requires qtbot which is unmaintained/not in Nixpkgs:
"test_plotting_scalebars"
# tries to write a datetime object to hdf5, which fails:
"test_hitachi_basic"
# flaky
"test_fine_cal_systems"
"test_simulate_raw_bem"
]
++ lib.optionals (pythonAtLeast "3.14") [
#https://github.com/mne-tools/mne-python/issues/13577
"test_set_montage_artinis_basic"
];
pytestFlag = [
# removes 700k lines from pytest log, remove this when scipy is at v1.17.0
"--disable-warnings"
];
disabledTestMarks = [
"slowtest"
"ultraslowtest"
"pgtest"
];
pythonImportsCheck = [ "mne" ];
meta = {
description = "Magnetoencephelography and electroencephalography in Python";
mainProgram = "mne";
homepage = "https://mne.tools";
changelog = "https://mne.tools/stable/changes/v${lib.versions.majorMinor version}.html";
license = lib.licenses.bsd3;
maintainers = with lib.maintainers; [
bcdarwin
];
};
}
|
