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|
{
lib,
buildPythonPackage,
fetchFromGitHub,
pytestCheckHook,
numpy,
pillow,
pydicom,
pyjpegls,
pylibjpeg,
pylibjpeg-libjpeg,
pylibjpeg-openjpeg,
setuptools,
typing-extensions,
}:
buildPythonPackage rec {
pname = "highdicom";
version = "0.27.0";
pyproject = true;
src = fetchFromGitHub {
owner = "MGHComputationalPathology";
repo = "highdicom";
tag = "v${version}";
hash = "sha256-Tfy7u5MVapRE24CZLFzTnYChnH9JJ9V7FuUhDoktBFc=";
};
build-system = [
setuptools
];
dependencies = [
numpy
pillow
pydicom
pyjpegls
typing-extensions
];
optional-dependencies = {
libjpeg = [
pylibjpeg
pylibjpeg-libjpeg
pylibjpeg-openjpeg
];
};
nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.libjpeg;
preCheck = ''
export HOME=$TMP/test-home
mkdir -p $HOME/.pydicom/
ln -s ${pydicom.passthru.pydicom-data}/data_store/data $HOME/.pydicom/data
'';
pythonImportsCheck = [
"highdicom"
"highdicom.legacy"
"highdicom.ann"
"highdicom.ko"
"highdicom.pm"
"highdicom.pr"
"highdicom.seg"
"highdicom.sr"
"highdicom.sc"
];
meta = {
description = "High-level DICOM abstractions for Python";
homepage = "https://highdicom.readthedocs.io";
changelog = "https://github.com/ImagingDataCommons/highdicom/releases/tag/v${version}";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
