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{
lib,
buildPythonPackage,
datalad,
dcm2niix,
dcmstack,
etelemetry,
fetchPypi,
filelock,
git,
git-annex,
nibabel,
nipype,
pydicom,
pytestCheckHook,
setuptools,
versioningit,
}:
buildPythonPackage rec {
pname = "heudiconv";
version = "1.3.4";
pyproject = true;
src = fetchPypi {
inherit pname version;
hash = "sha256-zT/xy9f0GBmhGJm4Gd0ZEKNSifBBjx0RmTOqq6qN4ao=";
};
postPatch = ''
substituteInPlace pyproject.toml \
--replace-fail "versioningit ~=" "versioningit >="
'';
build-system = [
setuptools
versioningit
];
dependencies = [
dcmstack
etelemetry
filelock
nibabel
nipype
pydicom
];
nativeCheckInputs = [
datalad
dcm2niix
pytestCheckHook
git
git-annex
];
preCheck = ''
export HOME=$(mktemp -d)
'';
pythonImportsCheck = [ "heudiconv" ];
disabledTests = [
# No such file or directory
"test_bvals_are_zero"
# tries to access internet
"test_partial_xa_conversion"
];
meta = {
description = "Flexible DICOM converter for organizing imaging data";
homepage = "https://heudiconv.readthedocs.io";
changelog = "https://github.com/nipy/heudiconv/releases/tag/v${version}";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
