1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
|
{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
# build-system
poetry-core,
poetry-dynamic-versioning,
# dependencies
anytree,
beartype,
future,
gensim,
graspologic-native,
hyppo,
joblib,
matplotlib,
networkx,
numpy,
pot,
scikit-learn,
scipy,
seaborn,
statsmodels,
typing-extensions,
umap-learn,
# tests
pytestCheckHook,
testfixtures,
}:
buildPythonPackage rec {
pname = "graspologic";
version = "3.4.4";
pyproject = true;
src = fetchFromGitHub {
owner = "graspologic-org";
repo = "graspologic";
tag = "v${version}";
hash = "sha256-ulsb7jD/tIVEISjnNRif7VO+ZcXCAGIFl1SNZhOC7ik=";
};
# Fix numpy 2 compat
postPatch = ''
substituteInPlace graspologic/utils/utils.py \
--replace-fail "np.float_" "np.float64"
substituteInPlace graspologic/embed/omni.py \
--replace-fail \
"A = np.array(graphs, copy=False, ndmin=3)" \
"A = np.asarray(graphs)"
'';
build-system = [
poetry-core
poetry-dynamic-versioning
];
pythonRelaxDeps = [
"beartype"
"hyppo"
"numpy"
"scipy"
];
dependencies = [
anytree
beartype
future
gensim
graspologic-native
hyppo
joblib
matplotlib
networkx
numpy
pot
scikit-learn
scipy
seaborn
statsmodels
typing-extensions
umap-learn
];
env.NUMBA_CACHE_DIR = "$TMPDIR";
nativeCheckInputs = [
pytestCheckHook
testfixtures
];
enabledTestPaths = [
"tests"
];
disabledTests = [ "gridplot_outputs" ];
disabledTestPaths = [
"docs"
]
++ lib.optionals stdenv.hostPlatform.isDarwin [
# SIGABRT
"tests/test_plot.py"
"tests/test_plot_matrix.py"
# Hang forever
"tests/pipeline/embed/"
];
meta = {
description = "Package for graph statistical algorithms";
homepage = "https://graspologic-org.github.io/graspologic";
changelog = "https://github.com/graspologic-org/graspologic/releases/tag/${src.tag}";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [ bcdarwin ];
};
}
|
