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{
buildPythonPackage,
lib,
fetchurl,
fetchpatch,
stdenv,
boost189,
cairomm,
cgal,
expat,
fontconfig,
gobject-introspection,
graphviz,
gtk3,
llvmPackages,
matplotlib,
mpfr,
numpy,
pkg-config,
pycairo,
pygobject3,
python,
scipy,
sparsehash,
zstandard,
gitUpdater,
}:
let
boost' = boost189.override {
patches = [
# required to build against Clang >= 21 (https://github.com/boostorg/lexical_cast/pull/87)
# TODO: drop when upgrading to Boost >= 1.90
(fetchpatch {
name = "Reduce-dependency-on-Boost.TypeTraits-now-that-C-11-.patch";
url = "https://github.com/boostorg/lexical_cast/commit/8fc8a19931c8cb452400af907959fdacbbdd8ec1.patch";
relative = "include";
hash = "sha256-OO39ejR+I5ufjqinrMJ6HgjTE7Ph+XBu50PqcIKaIQo=";
})
];
enablePython = true;
inherit python;
};
in
buildPythonPackage rec {
pname = "graph-tool";
version = "2.98";
pyproject = false;
src = fetchurl {
url = "https://downloads.skewed.de/graph-tool/graph-tool-${version}.tar.bz2";
hash = "sha256-7vGUi5N/XwQ3Se7nX+DG1+jwNlUdlF6dVeN4cLBsxSc=";
};
postPatch =
# remove error messages about tput during build process without adding ncurses
''
substituteInPlace configure \
--replace-fail 'tput setaf $1' : \
--replace-fail 'tput sgr0' :
''
+
# hardcode path to graphviz library to avoid find_library, which would require setting LD_LIBRARY_PATH
''
substituteInPlace src/graph_tool/draw/graphviz_draw.py \
--replace-fail \
'ctypes.util.find_library("gvc")' \
'"${lib.getLib graphviz}/lib/libgvc${stdenv.hostPlatform.extensions.sharedLibrary}"'
'';
configureFlags =
lib.mapAttrsToList (lib.withFeatureAs true) {
boost-libdir = "${lib.getLib boost'}/lib";
cgal = lib.getDev cgal;
python-module-path = "$(out)/${python.sitePackages}";
}
++
lib.optionals stdenv.cc.isGNU
# enable GCC's link-time optimizer in order to reduce compilation time and memory usage during compilation
# https://graph-tool.skewed.de/installation.html#memory-requirements-for-compilation
# https://git.skewed.de/count0/graph-tool/-/issues/798#note_5626
[ "MOD_CXXFLAGS=-flto" ];
enableParallelBuilding = true;
nativeBuildInputs = [ pkg-config ];
# https://graph-tool.skewed.de/installation.html#manual-compilation
buildInputs = [
boost'
cairomm
cgal
expat
mpfr
sparsehash
]
++ lib.optionals stdenv.cc.isClang [ llvmPackages.openmp ];
dependencies = [
gtk3
matplotlib
numpy
pycairo
pygobject3
scipy
zstandard
];
propagatedNativeBuildInputs = [ gobject-introspection ];
preInstallCheck =
# avoid warnings about Matplotlib and Fontconfig configuration issues
''
export HOME=$(mktemp -d)
export FONTCONFIG_FILE=${fontconfig.out}/etc/fonts/fonts.conf
'';
pythonImportsCheck = [ "graph_tool.all" ];
passthru.updateScript = gitUpdater {
url = "https://git.skewed.de/count0/graph-tool";
rev-prefix = "release-";
};
meta = {
description = "Python module for manipulation and statistical analysis of graphs";
homepage = "https://graph-tool.skewed.de";
changelog = "https://git.skewed.de/count0/graph-tool/commits/release-${version}";
license = lib.licenses.lgpl3Plus;
maintainers = [ lib.maintainers.mjoerg ];
};
}
|
