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{
lib,
stdenv,
buildPythonPackage,
fetchFromGitHub,
pytestCheckHook,
pythonOlder,
nix-update-script,
setuptools,
paup-cli,
paupIntegration ? false,
}:
let
paupPath = if paupIntegration then lib.getExe paup-cli else "NONE";
in
buildPythonPackage rec {
pname = "dendropy";
version = "5.0.8";
pyproject = true;
build-system = [ setuptools ];
src = fetchFromGitHub {
owner = "jeetsukumaran";
repo = "dendropy";
tag = "v${version}";
hash = "sha256-AmKm9V4XZQRuAfe0R5r5/wicno9iTZ6nbwHyHvMijz0=";
};
postPatch = ''
substituteInPlace setup.py \
--replace '["pytest-runner"],' '[],'
substituteInPlace src/dendropy/interop/paup.py \
--replace 'PAUP_PATH = os.environ.get(metavar.DENDROPY_PAUP_PATH_ENVAR, "paup")' 'PAUP_PATH = os.environ.get(metavar.DENDROPY_PAUP_PATH_ENVAR, "${paupPath}")'
'';
nativeCheckInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "dendropy" ];
passthru.updateScript = nix-update-script { };
meta = {
description = "Python library for phylogenetic computing";
homepage = "https://jeetsukumaran.github.io/DendroPy/";
license = lib.licenses.bsd3;
maintainers = with lib.maintainers; [
unode
pandapip1
];
};
}
|
