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{
buildPythonPackage,
lib,
setuptools,
stdenv,
fetchFromGitHub,
pythonAtLeast,
installShellFiles,
git,
versioneer,
# core
platformdirs,
chardet,
iso8601,
humanize,
fasteners,
packaging,
patool,
tqdm,
annexremote,
looseversion,
git-annex,
# downloaders
boto3,
keyrings-alt,
keyring,
msgpack,
requests,
# publish
python-gitlab,
# misc
argcomplete,
pyperclip,
python-dateutil,
# duecredit
duecredit,
distro,
# win
colorama,
# python-version-dependent
pythonOlder,
typing-extensions,
# tests
pytest-xdist,
pytestCheckHook,
p7zip,
curl,
httpretty,
}:
buildPythonPackage rec {
pname = "datalad";
version = "1.2.3";
pyproject = true;
src = fetchFromGitHub {
owner = "datalad";
repo = "datalad";
tag = version;
hash = "sha256-C3e9k4RDFfDMaimZ/7TtAJNzdlfVrKoTHVl0zKL9EjI=";
};
postPatch = ''
# Remove vendorized versioneer.py
rm versioneer.py
'';
nativeBuildInputs = [
installShellFiles
git
];
build-system = [
setuptools
versioneer
];
dependencies =
optional-dependencies.core ++ optional-dependencies.downloaders ++ optional-dependencies.publish;
optional-dependencies = {
core = [
platformdirs
chardet
distro
iso8601
humanize
fasteners
packaging
patool
tqdm
annexremote
looseversion
]
++ lib.optionals stdenv.hostPlatform.isWindows [ colorama ]
++ lib.optionals (pythonOlder "3.11") [ typing-extensions ];
downloaders = [
boto3
keyrings-alt
keyring
msgpack
requests
];
downloaders-extra = [
# requests-ftp # not in nixpkgs yet
];
publish = [ python-gitlab ];
misc = [
argcomplete
pyperclip
python-dateutil
];
duecredit = [ duecredit ];
};
postInstall = ''
installShellCompletion --cmd datalad \
--bash <($out/bin/datalad shell-completion) \
--zsh <($out/bin/datalad shell-completion)
wrapProgram $out/bin/datalad \
--prefix PATH : "${git-annex}/bin" \
--prefix PYTHONPATH : "$PYTHONPATH"
'';
preCheck = ''
export HOME=$TMPDIR
'';
# tests depend on apps in $PATH which only will get installed after the test
disabledTests = [
# No such file or directory: 'datalad'
"test_script_shims"
"test_cfg_override"
"test_completion"
"test_nested_pushclone_cycle_allplatforms"
"test_create_sub_gh3463"
"test_create_sub_dataset_dot_no_path"
"test_cfg_passthrough"
"test_addurls_stdin_input_command_line"
"test_run_datalad_help"
"test_status_custom_summary_no_repeats"
"test_quoting"
# No such file or directory: 'git-annex-remote-[...]"
"test_create"
"test_ensure_datalad_remote_maybe_enable"
# "git-annex: unable to use external special remote git-annex-remote-datalad"
"test_ria_postclonecfg"
"test_ria_postclone_noannex"
"test_ria_push"
"test_basic_scenario"
"test_annex_get_from_subdir"
"test_ensure_datalad_remote_init_and_enable_needed"
"test_ensure_datalad_remote_maybe_enable[False]"
"test_ensure_datalad_remote_maybe_enable[True]"
"test_create_simple"
"test_create_alias"
"test_storage_only"
"test_initremote"
"test_read_access"
"test_ephemeral"
"test_initremote_basic_fileurl"
"test_initremote_basic_httpurl"
"test_remote_layout"
"test_version_check"
"test_gitannex_local"
"test_push_url"
"test_url_keys"
"test_obtain_permission_root"
"test_source_candidate_subdataset"
"test_update_fetch_all"
"test_add_archive_dirs"
"test_add_archive_content"
"test_add_archive_content_strip_leading"
"test_add_archive_content_zip"
"test_add_archive_content_absolute_path"
"test_add_archive_use_archive_dir"
"test_add_archive_single_file"
"test_add_delete"
"test_add_archive_leading_dir"
"test_add_delete_after_and_drop"
"test_add_delete_after_and_drop_subdir"
"test_override_existing_under_git"
"test_copy_file_datalad_specialremote"
"test_download_url_archive"
"test_download_url_archive_from_subdir"
"test_download_url_archive_trailing_separator"
"test_download_url_need_datalad_remote"
"test_datalad_credential_helper - assert False"
# need internet access
"test_clone_crcns"
"test_clone_datasets_root"
"test_reckless"
"test_autoenabled_remote_msg"
"test_ria_http_storedataladorg"
"test_gin_cloning"
"test_nonuniform_adjusted_subdataset"
"test_install_datasets_root"
"test_install_simple_local"
"test_install_dataset_from_just_source"
"test_install_dataset_from_just_source_via_path"
"test_datasets_datalad_org"
"test_get_cached_dataset"
"test_cached_dataset"
"test_cached_url"
"test_anonymous_s3"
"test_protocols"
"test_get_versioned_url_anon"
"test_install_recursive_github"
"test_failed_install_multiple"
# pbcopy not found
"test_wtf"
# CommandError: 'git -c diff.ignoreSubmodules=none -c core.quotepath=false ls-files -z -m -d' failed with exitcode 128
"test_subsuperdataset_save"
]
++ lib.optionals (pythonAtLeast "3.14") [
# For all: https://github.com/datalad/datalad/issues/7781
# AssertionError: `assert 1 == 0` (refcount error)
"test_GitRepo_flyweight"
"test_Dataset_flyweight"
"test_AnnexRepo_flyweight"
# TypeError: cannot pickle '_thread.lock' object
"test_popen_invocation"
# datalad.runner.exception.CommandError: '/python3.14 -i -u -q -']' timed out after 0.5 seconds
"test_asyncio_loop_noninterference1"
];
nativeCheckInputs = [
p7zip
pytest-xdist
pytestCheckHook
git-annex
curl
httpretty
];
pytestFlags = [
# Deprecated in 3.13. Use exc_type_str instead.
"-Wignore::DeprecationWarning"
];
pythonImportsCheck = [ "datalad" ];
meta = {
description = "Keep code, data, containers under control with git and git-annex";
homepage = "https://www.datalad.org";
license = lib.licenses.mit;
maintainers = with lib.maintainers; [
renesat
malik
];
};
}
|
