1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
|
{
lib,
buildPythonPackage,
cwl-upgrader,
cwlformat,
fetchFromGitHub,
jsonschema,
packaging,
pytest-mock,
pytest-xdist,
pytestCheckHook,
rdflib,
requests,
ruamel-yaml,
schema-salad,
setuptools,
}:
buildPythonPackage rec {
pname = "cwl-utils";
version = "0.40";
pyproject = true;
src = fetchFromGitHub {
owner = "common-workflow-language";
repo = "cwl-utils";
tag = "v${version}";
hash = "sha256-A9+JvtSTPfXK/FGJ8pplT06kkuatZu1fgjjmg74oTvE=";
};
build-system = [ setuptools ];
dependencies = [
cwl-upgrader
packaging
rdflib
requests
ruamel-yaml
schema-salad
];
nativeCheckInputs = [
cwlformat
jsonschema
pytest-mock
pytest-xdist
pytestCheckHook
];
pythonImportsCheck = [ "cwl_utils" ];
disabledTests = [
# Don't run tests which require Node.js
"test_context_multiple_regex"
"test_value_from_two_concatenated_expressions"
"test_graph_split"
"test_caches_js_processes"
"test_load_document_with_remote_uri"
# Don't run tests which require network access
"test_remote_packing"
"test_remote_packing_github_soft_links"
"test_cwl_inputs_to_jsonschema"
];
disabledTestPaths = [
# Tests require podman
"tests/test_docker_extract.py"
# Tests requires singularity
"tests/test_js_sandbox.py"
# Circular dependencies
"tests/test_graph_split.py"
];
meta = {
description = "Utilities for CWL";
homepage = "https://github.com/common-workflow-language/cwl-utils";
changelog = "https://github.com/common-workflow-language/cwl-utils/releases/tag/v${version}";
license = lib.licenses.asl20;
maintainers = with lib.maintainers; [ fab ];
};
}
|
