summaryrefslogtreecommitdiff
path: root/pkgs/development/python-modules/apache-beam/default.nix
blob: 9b2de4e56237bdb81fe3a9aedd4eddc73bf2ef60 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
{
  lib,
  stdenv,
  buildPythonPackage,
  fetchFromGitHub,

  # build-system
  cython,
  distlib,
  grpcio-tools,
  jinja2,
  jsonpickle,
  jsonschema,
  mypy-protobuf,
  redis,
  setuptools,
  yapf,

  # dependencies
  beartype,
  crcmod,
  cryptography,
  dill,
  fastavro,
  fasteners,
  grpcio,
  hdfs,
  httplib2,
  numpy,
  objsize,
  orjson,
  proto-plus,
  protobuf,
  pyarrow,
  pydot,
  pymongo,
  python-dateutil,
  pytz,
  regex,
  requests,
  typing-extensions,
  zstandard,

  # tests
  python,
  docstring-parser,
  freezegun,
  hypothesis,
  mock,
  pandas,
  parameterized,
  psycopg2,
  pyhamcrest,
  pytest-xdist,
  pytestCheckHook,
  pyyaml,
  requests-mock,
  scikit-learn,
  sqlalchemy,
  tenacity,
  testcontainers,
  which,
  pythonAtLeast,
}:

buildPythonPackage rec {
  pname = "apache-beam";
  version = "2.70.0";
  pyproject = true;

  src = fetchFromGitHub {
    owner = "apache";
    repo = "beam";
    tag = "v${version}";
    hash = "sha256-sySHoknK2FmiAEOpRdF9i3vA6NvnDrZyBCghVoyEzLw=";
  };

  sourceRoot = "${src.name}/sdks/python";

  postPatch = ''
    substituteInPlace pyproject.toml \
      --replace-fail "==" ">=" \
      --replace-fail ",<2.3.0" ""

    substituteInPlace setup.py \
      --replace-fail "  copy_tests_from_docs()" ""
  '';

  pythonRelaxDeps = [
    "beartype"
    "grpcio"
    "jsonpickle"
    "objsize"

    # As of apache-beam v2.55.1, the requirement is cloudpickle~=2.2.1, but
    # the current (2024-04-20) nixpkgs's pydot version is 3.0.0.
    "cloudpickle"

    # See https://github.com/NixOS/nixpkgs/issues/156957
    "dill"

    "numpy"

    "protobuf"

    # As of apache-beam v2.45.0, the requirement is pyarrow<10.0.0,>=0.15.1, but
    # the current (2023-02-22) nixpkgs's pyarrow version is 11.0.0.
    "pyarrow"

    "pydot"
    "redis"
  ];

  build-system = [
    cython
    distlib
    grpcio-tools
    jinja2
    jsonpickle
    jsonschema
    mypy-protobuf
    redis
    setuptools
    yapf
  ];

  dependencies = [
    beartype
    crcmod
    cryptography
    dill
    fastavro
    fasteners
    grpcio
    hdfs
    httplib2
    numpy
    objsize
    orjson
    proto-plus
    protobuf
    pyarrow
    pydot
    pymongo
    python-dateutil
    pytz
    regex
    requests
    typing-extensions
    zstandard
  ];

  enableParallelBuilding = true;

  __darwinAllowLocalNetworking = true;

  pythonImportsCheck = [ "apache_beam" ];

  nativeCheckInputs = [
    docstring-parser
    freezegun
    hypothesis
    mock
    pandas
    parameterized
    psycopg2
    pyhamcrest
    pytest-xdist
    pytestCheckHook
    pyyaml
    requests-mock
    scikit-learn
    sqlalchemy
    tenacity
    testcontainers
    which
  ];

  # Make sure we're running the tests for the actually installed
  # package, so that cython's .so files are available.
  preCheck = ''
    cd $out/${python.sitePackages}
  '';

  disabledTestPaths = [
    #  FileNotFoundError: [Errno 2] No such file or directory:
    # '/nix/store/...-python3.13-apache-beam-2.67.0/lib/python3.13/site-packages/apache_beam/yaml/docs/yaml.md'
    "apache_beam/yaml/examples/testing/examples_test.py"

    # from google.cloud.sql.connector import Connector
    # E   ModuleNotFoundError: No module named 'google.cloud'
    "apache_beam/ml/rag/ingestion/cloudsql_it_test.py"

    # Fails with
    #     _______ ERROR collecting apache_beam/io/external/xlang_jdbcio_it_test.py _______
    #     apache_beam/io/external/xlang_jdbcio_it_test.py:80: in <module>
    #         class CrossLanguageJdbcIOTest(unittest.TestCase):
    #     apache_beam/io/external/xlang_jdbcio_it_test.py:99: in CrossLanguageJdbcIOTest
    #         container_init: Callable[[], Union[PostgresContainer, MySqlContainer]],
    #     E   NameError: name 'MySqlContainer' is not defined
    #
    "apache_beam/io/external/xlang_jdbcio_it_test.py"

    # AttributeError: '_TruncatingFileHandle' object has no attribute 'close'.
    "apache_beam/ml/rag/ingestion/milvus_search_it_test.py"

    # These tests depend on the availability of specific servers backends.
    "apache_beam/runners/portability/flink_runner_test.py"
    "apache_beam/runners/portability/samza_runner_test.py"
    "apache_beam/runners/portability/spark_runner_test.py"

    # Fails starting from dill 0.3.6 because it tries to pickle pytest globals:
    # https://github.com/uqfoundation/dill/issues/482#issuecomment-1139017499.
    "apache_beam/transforms/window_test.py"

    # See https://github.com/apache/beam/issues/25390.
    "apache_beam/coders/slow_coders_test.py"
    "apache_beam/dataframe/pandas_doctests_test.py"
    "apache_beam/typehints/typed_pipeline_test.py"
    "apache_beam/coders/fast_coders_test.py"
    "apache_beam/dataframe/schemas_test.py"

    # Fails with TypeError: cannot pickle 'EncodedFile' instances
    # Upstream issue https://github.com/apache/beam/issues/33889
    "apache_beam/options/pipeline_options_validator_test.py"
    "apache_beam/yaml/main_test.py"
    "apache_beam/yaml/programming_guide_test.py"
    "apache_beam/yaml/readme_test.py"
    "apache_beam/yaml/yaml_combine_test.py"
    "apache_beam/yaml/yaml_enrichment_test.py"
    "apache_beam/yaml/yaml_io_test.py"
    "apache_beam/yaml/yaml_join_test.py"
    "apache_beam/yaml/yaml_mapping_test.py"
    "apache_beam/yaml/yaml_ml_test.py"
    "apache_beam/yaml/yaml_provider_unit_test.py"

    # FIXME AttributeError: 'Namespace' object has no attribute 'test_pipeline_options'
    # Upstream issue https://github.com/apache/beam/issues/33853
    "apache_beam/runners/portability/prism_runner_test.py"

    # FIXME ValueError: Unable to run pipeline with requirement: unsupported_requirement
    # Upstream issuehttps://github.com/apache/beam/issues/33853
    "apache_beam/yaml/yaml_transform_scope_test.py"
    "apache_beam/yaml/yaml_transform_test.py"
    "apache_beam/yaml/yaml_transform_unit_test.py"
    "apache_beam/yaml/yaml_udf_test.py"
    "apache_beam/dataframe/frames_test.py"

    # FIXME Those tests do not terminate due to a grpc error (threading issue)
    # grpc_status:14, grpc_message:"Cancelling all calls"}"
    # Upstream issue https://github.com/apache/beam/issues/33851
    "apache_beam/runners/portability/portable_runner_test.py"
  ]
  ++ lib.optionals (pythonAtLeast "3.13") [
    # > instruction = ofs_table[pc]
    # E KeyError: 18
    "apache_beam/typehints/trivial_inference_test.py"
  ];

  disabledTests = [
    # RuntimeError: This pipeline runs with the pipeline option --update_compatibility_version=2.67.0 or earlier.
    # When running with this option on SDKs 2.68.0 or later, you must ensure dill==0.3.1.1 is installed. Error
    "test_reshuffle_custom_window_preserves_metadata_1"
    "test_reshuffle_default_window_preserves_metadata_1"

    # Dill version 0.3.1.1 is required when using pickle_library=dill.
    # Other versions of dill are untested with Apache Beam.
    "LocalCombineFnLifecycleTest_0_dill"
    "LocalCombineFnLifecycleTest_2_dill"
    "test_runner_overrides_default_pickler"

    # Require internet access
    "test_local_jar_fallback_to_google_maven_mirror"

    # AssertionError: Lists differ
    "test_default_resources"
    "test_files_to_stage"
    "test_main_session_not_staged_when_using_cloudpickle"
    "test_no_main_session"
    "test_populate_requirements_cache_with_local_files"
    "test_requirements_cache_not_populated_when_cache_disabled"
    "test_sdk_location_default"
    "test_sdk_location_http"
    "test_sdk_location_local_directory"
    "test_sdk_location_local_source_file"
    "test_sdk_location_local_wheel_file"
    "test_sdk_location_remote_source_file"
    "test_sdk_location_remote_wheel_file"
    "test_with_extra_packages"
    "test_with_jar_packages"
    "test_with_main_session"
    "test_with_pypi_requirements"
    "test_with_requirements_file"
    "test_with_requirements_file_and_cache"

    # ValueError: SplitAtFraction test completed vacuously: no non-trivial split fractions found
    "test_dynamic_work_rebalancing"

    # fixture 'self' not found
    "test_with_batched_input_exceeds_size_limit"
    "test_with_batched_input_splits_large_batch"

    # IndexError: list index out of range
    "test_only_sample_exceptions"

    # AssertionError: False is not true
    "test_samples_all_with_both_experiments"
  ]
  ++ lib.optionals stdenv.hostPlatform.isDarwin [
    #  PermissionError: [Errno 13] Permission denied: '/tmp/...'
    "test_cache_manager_uses_local_ib_cache_root"
    "test_describe_all_recordings"
    "test_find_out_correct_user_pipeline"
    "test_get_cache_manager_creates_cache_manager_if_absent"
    "test_streaming_cache_uses_local_ib_cache_root"
    "test_track_user_pipeline_cleanup_non_inspectable_pipeline"
  ]
  ++ lib.optionals (pythonAtLeast "3.12") [
    # TypeError: Could not determine schema for type hint Any.
    "test_batching_beam_row_input"
    "test_auto_convert"
    "test_unbatching_series"
    "test_batching_beam_row_to_dataframe"

    # AssertionError: Any != <class 'int'>
    "test_pycallable_map"
    "testAlwaysReturnsEarly"

    # TypeError: Expected Iterator in return type annotatio
    "test_get_output_batch_type"
  ];

  meta = {
    description = "Unified model for defining both batch and streaming data-parallel processing pipelines";
    homepage = "https://beam.apache.org/";
    changelog = "https://github.com/apache/beam/blob/${src.tag}/CHANGES.md";
    license = lib.licenses.asl20;
    maintainers = with lib.maintainers; [ ndl ];
  };
}