Merge 6ddb0f7cddda1b20f1a6834d8c09995a431a5ec0 into haskell-updates

25 files changed, 321 insertions, 66 deletions

diff --git a/pkgs/development/python-modules/aiohomeconnect/default.nix b/pkgs/development/python-modules/aiohomeconnect/default.nix
index ffa755c21533..e2ed0f5b81de 100644
--- a/pkgs/development/python-modules/aiohomeconnect/default.nix
+++ b/pkgs/development/python-modules/aiohomeconnect/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "aiohomeconnect";
-  version = "0.11.2";
+  version = "0.11.4";
   pyproject = true;
 
   disabled = pythonOlder "3.11";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     owner = "MartinHjelmare";
     repo = "aiohomeconnect";
     tag = "v${version}";
-    hash = "sha256-YnQypKeVYoHD445fv9n643qIqjTCInCfbTHPUrMePJI=";
+    hash = "sha256-feAjp1DjZeNTOf0lWN23pap7oDiqSx0v6tf6uIVf1fU=";
   };
 
   pythonRelaxDeps = [ "httpx" ];
diff --git a/pkgs/development/python-modules/aiosomecomfort/default.nix b/pkgs/development/python-modules/aiosomecomfort/default.nix
index 2067bcc937ff..32bb612d8c8b 100644
--- a/pkgs/development/python-modules/aiosomecomfort/default.nix
+++ b/pkgs/development/python-modules/aiosomecomfort/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "aiosomecomfort";
-  version = "0.0.28";
+  version = "0.0.30";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "mkmer";
     repo = "AIOSomecomfort";
     tag = version;
-    hash = "sha256-AsYq5ElfHtUoEEI5TMIs0wf5yMK1ZKCteWYfTon+Wik=";
+    hash = "sha256-1hKJG1F0tLHVvgaI3m82/11KUmm99zwn26z9G279Cig=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/altair/default.nix b/pkgs/development/python-modules/altair/default.nix
index e8efade4fda9..ae2750caf8cd 100644
--- a/pkgs/development/python-modules/altair/default.nix
+++ b/pkgs/development/python-modules/altair/default.nix
@@ -22,16 +22,16 @@
 
 buildPythonPackage rec {
   pname = "altair";
-  version = "5.4.1";
+  version = "5.5.0";
   pyproject = true;
 
-  disabled = pythonOlder "3.8";
+  disabled = pythonOlder "3.9";
 
   src = fetchFromGitHub {
     owner = "altair-viz";
     repo = "altair";
     tag = "v${version}";
-    hash = "sha256-7C51ACaBuNtOSXqLpuCI5bnLyE9U64vNXlD4/msPq2k=";
+    hash = "sha256-lrKC4FYRQEax5E0lQNhO9FLk5UOJ0TnYzqZjndlRpGI=";
   };
 
   build-system = [ hatchling ];
@@ -60,6 +60,11 @@ buildPythonPackage rec {
   disabledTests = [
     # ValueError: Saving charts in 'svg' format requires the vl-convert-python or altair_saver package: see http://github.com/altair-viz/altair_saver/
     "test_renderer_with_none_embed_options"
+    # Sometimes conflict due to parallelism
+    "test_dataframe_to_csv[polars]"
+    "test_dataframe_to_csv[pandas]"
+    # Network access
+    "test_theme_remote_lambda"
   ];
 
   disabledTestPaths = [
diff --git a/pkgs/development/python-modules/blackjax/default.nix b/pkgs/development/python-modules/blackjax/default.nix
index 69865be6e5bd..5b02bf3450d6 100644
--- a/pkgs/development/python-modules/blackjax/default.nix
+++ b/pkgs/development/python-modules/blackjax/default.nix
@@ -49,17 +49,28 @@ buildPythonPackage rec {
     pytest-xdist
   ];
 
-  disabledTestPaths =
-    [ "tests/test_benchmarks.py" ]
-    ++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
-      # Assertion errors on numerical values
-      "tests/mcmc/test_integrators.py"
-    ];
+  disabledTestPaths = [
+    "tests/test_benchmarks.py"
+
+    # Assertion errors on numerical values
+    "tests/mcmc/test_integrators.py"
+  ];
 
   disabledTests =
     [
       # too slow
       "test_adaptive_tempered_smc"
+
+      # AssertionError on numerical values
+      "test_barker"
+      "test_mclmc"
+      "test_mcse4"
+      "test_normal_univariate"
+      "test_nuts__with_device"
+      "test_nuts__with_jit"
+      "test_nuts__without_device"
+      "test_nuts__without_jit"
+      "test_smc_waste_free__with_jit"
     ]
     ++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
       # Numerical test (AssertionError)
diff --git a/pkgs/development/python-modules/conda-libmamba-solver/default.nix b/pkgs/development/python-modules/conda-libmamba-solver/default.nix
index fceb265592e5..dcbe419854bc 100644
--- a/pkgs/development/python-modules/conda-libmamba-solver/default.nix
+++ b/pkgs/development/python-modules/conda-libmamba-solver/default.nix
@@ -9,7 +9,7 @@
 }:
 buildPythonPackage rec {
   pname = "conda-libmamba-solver";
-  version = "24.11.1";
+  version = "25.1.1";
   pyproject = true;
 
   src = fetchFromGitHub {
@@ -17,7 +17,7 @@ buildPythonPackage rec {
     owner = "conda";
     repo = "conda-libmamba-solver";
     tag = version;
-    hash = "sha256-lIpMzm3wjkugMDwqmVFXDKVJyX/SdzFG5jelZRys8PQ=";
+    hash = "sha256-d6KLUhc7+KZ5H9vkI84S9TyximSwatu6lg7XIdMqtk0=";
   };
 
 
diff --git a/pkgs/development/python-modules/cyclopts/default.nix b/pkgs/development/python-modules/cyclopts/default.nix
index 7a859d9bab5a..094193c51319 100644
--- a/pkgs/development/python-modules/cyclopts/default.nix
+++ b/pkgs/development/python-modules/cyclopts/default.nix
@@ -19,7 +19,7 @@
 
 buildPythonPackage rec {
   pname = "cyclopts";
-  version = "3.3.0";
+  version = "3.3.1";
   pyproject = true;
 
   disabled = pythonOlder "3.8";
@@ -28,7 +28,7 @@ buildPythonPackage rec {
     owner = "BrianPugh";
     repo = "cyclopts";
     tag = "v${version}";
-    hash = "sha256-sXTKBDfQSqMWBX+wrhP6fCugGSuXM8mOkEroFWPalVs=";
+    hash = "sha256-PrhaUUzFQJ7tqUdu7nwi9k+NxQUPQWYDUc9vsvnmfeY=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/databricks-sdk/default.nix b/pkgs/development/python-modules/databricks-sdk/default.nix
index 1db7d3e429dc..3e544760d2fd 100644
--- a/pkgs/development/python-modules/databricks-sdk/default.nix
+++ b/pkgs/development/python-modules/databricks-sdk/default.nix
@@ -22,14 +22,14 @@
 
 buildPythonPackage rec {
   pname = "databricks-sdk";
-  version = "0.40.0";
+  version = "0.41.0";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "databricks";
     repo = "databricks-sdk-py";
     tag = "v${version}";
-    hash = "sha256-x8CbjWdholuIGVr3TxbFjEszu0owjSIm7+G3Sh+cHEk=";
+    hash = "sha256-mKytUMPipee/sg5VWBTfCg0sZwNg69pI+Uuqu1EhNIc=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/datafusion/default.nix b/pkgs/development/python-modules/datafusion/default.nix
index c80baeef6e53..46d27a50e93e 100644
--- a/pkgs/development/python-modules/datafusion/default.nix
+++ b/pkgs/development/python-modules/datafusion/default.nix
@@ -47,10 +47,10 @@ buildPythonPackage rec {
     hash = "sha256-5WOSlx4XW9zO6oTY16lWQElShLv0ubflVPfSSEGrFgg=";
   };
 
-  cargoDeps = rustPlatform.fetchCargoTarball {
+  cargoDeps = rustPlatform.fetchCargoVendor {
     name = "datafusion-cargo-deps";
     inherit src;
-    hash = "sha256-hN03tbnH77VsMDxSMddMHIH00t7lUs5h8rTHbiMIExw=";
+    hash = "sha256-xUpchV4UFEX1HkCpClOwxnEfGLVlOIX4UmzYKiUth9U=";
   };
 
   nativeBuildInputs = with rustPlatform; [
diff --git a/pkgs/development/python-modules/deepsearch-glm/default.nix b/pkgs/development/python-modules/deepsearch-glm/default.nix
new file mode 100644
index 000000000000..734e301f697b
--- /dev/null
+++ b/pkgs/development/python-modules/deepsearch-glm/default.nix
@@ -0,0 +1,106 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  cmake,
+  cxxopts,
+  deepsearch-toolkit,
+  docling-core,
+  fasttext,
+  fmt,
+  loguru,
+  matplotlib,
+  nlohmann_json,
+  pandas,
+  pcre2,
+  pkg-config,
+  poetry-core,
+  pybind11,
+  python-dotenv,
+  requests,
+  rich,
+  sentencepiece,
+  tabulate,
+  tqdm,
+  utf8cpp,
+  zlib,
+}:
+
+buildPythonPackage rec {
+  pname = "deepsearch-glm";
+  version = "1.0.0";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "DS4SD";
+    repo = "deepsearch-glm";
+    tag = "v${version}";
+    hash = "sha256-3sJNkrx0tTm6RMYAwV8Aha7x8dZjf4tGdds8OScRff8=";
+  };
+
+  dontUseCmakeConfigure = true;
+
+  nativeBuildInputs = [
+    cmake
+    pkg-config
+  ];
+
+  build-system = [
+    poetry-core
+    pybind11
+  ];
+
+  env = {
+    NIX_CFLAGS_COMPILE = "-I${lib.getDev utf8cpp}/include/utf8cpp";
+    USE_SYSTEM_DEPS = true;
+  };
+
+  optional-dependencies = {
+    docling = [
+      docling-core
+      pandas
+    ];
+    pyplot = [
+      matplotlib
+    ];
+    toolkit = [
+      deepsearch-toolkit
+      python-dotenv
+    ];
+    utils = [
+      pandas
+      python-dotenv
+      requests
+      rich
+      tabulate
+      tqdm
+    ];
+  };
+
+  buildInputs = [
+    cxxopts
+    fasttext
+    fmt
+    loguru
+    nlohmann_json
+    pcre2
+    sentencepiece
+    utf8cpp
+    zlib
+  ];
+
+  # Test suite insists on downloading models, data etc. from s3 bucket
+  doCheck = false;
+
+  pythonImportsCheck = [
+    "deepsearch_glm"
+  ];
+
+  meta = {
+    changelog = "https://github.com/DS4SD/deepsearch-glm/releases/tag/v${version}";
+    description = "Create fast graph language models from converted PDF documents for knowledge extraction and Q&A";
+    homepage = "https://github.com/DS4SD/deepsearch-glm";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ booxter ];
+  };
+}
diff --git a/pkgs/development/python-modules/drafthorse/default.nix b/pkgs/development/python-modules/drafthorse/default.nix
index 4efde1b74bb8..81874cc6017a 100644
--- a/pkgs/development/python-modules/drafthorse/default.nix
+++ b/pkgs/development/python-modules/drafthorse/default.nix
@@ -10,14 +10,14 @@
 
 buildPythonPackage rec {
   pname = "drafthorse";
-  version = "2.4.0";
+  version = "2025.1.0";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "pretix";
     repo = "python-drafthorse";
     rev = version;
-    hash = "sha256-3W5rQ0YhyhIoZ+KsaOjlEJOrcoejPoTIJaylK7DOwKc=";
+    hash = "sha256-v4yN2VHSA6pOXCSHscHIECeQchZkzH+/Hal4JwGXh74=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/python-modules/flask-limiter/default.nix b/pkgs/development/python-modules/flask-limiter/default.nix
index 4365cd89bd39..f59ee0cf9263 100644
--- a/pkgs/development/python-modules/flask-limiter/default.nix
+++ b/pkgs/development/python-modules/flask-limiter/default.nix
@@ -21,7 +21,7 @@
 
 buildPythonPackage rec {
   pname = "flask-limiter";
-  version = "3.10.0";
+  version = "3.10.1";
   pyproject = true;
 
   disabled = pythonOlder "3.9";
@@ -30,7 +30,7 @@ buildPythonPackage rec {
     owner = "alisaifee";
     repo = "flask-limiter";
     tag = version;
-    hash = "sha256-spE0gVrPlbz0JDXGznJ6RN2uNAsQn7tbHxWGU98221M=";
+    hash = "sha256-AfreBLyJDogXnxB5cIoT766VFiHIIoVKAoBIra6Q+xs=";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/jax/default.nix b/pkgs/development/python-modules/jax/default.nix
index 7c83e9be3a12..c649bf57f04f 100644
--- a/pkgs/development/python-modules/jax/default.nix
+++ b/pkgs/development/python-modules/jax/default.nix
@@ -95,6 +95,8 @@ buildPythonPackage rec {
     ]
     ++ lib.optionals stdenv.hostPlatform.isDarwin [
       # SystemError: nanobind::detail::nb_func_error_except(): exception could not be translated!
+      # reported at: https://github.com/jax-ml/jax/issues/26106
+      "--deselect tests/pjit_test.py::PJitErrorTest::testAxisResourcesMismatch"
       "--deselect tests/shape_poly_test.py::ShapePolyTest"
       "--deselect tests/tree_util_test.py::TreeTest"
     ];
@@ -150,6 +152,7 @@ buildPythonPackage rec {
     ]
     ++ lib.optionals stdenv.hostPlatform.isDarwin [
       # SystemError: nanobind::detail::nb_func_error_except(): exception could not be translated!
+      # reported at: https://github.com/jax-ml/jax/issues/26106
       "testInAxesPyTreePrefixMismatchError"
       "testInAxesPyTreePrefixMismatchErrorKwargs"
       "testOutAxesPyTreePrefixMismatchError"
diff --git a/pkgs/development/python-modules/jaxopt/default.nix b/pkgs/development/python-modules/jaxopt/default.nix
index dbab34993a5c..c8ada5b43e31 100644
--- a/pkgs/development/python-modules/jaxopt/default.nix
+++ b/pkgs/development/python-modules/jaxopt/default.nix
@@ -89,11 +89,12 @@ buildPythonPackage rec {
     "test_binary_logit_log_likelihood"
 
     # AssertionError (flaky numerical tests)
-    "test_logreg_with_intercept_manual_loop3"
-    "test_inv_hessian_product_pytree3"
-    "test_multiclass_logreg6"
     "test_Rosenbrock2"
     "test_Rosenbrock5"
+    "test_gradient1"
+    "test_inv_hessian_product_pytree3"
+    "test_logreg_with_intercept_manual_loop3"
+    "test_multiclass_logreg6"
   ];
 
   meta = {
diff --git a/pkgs/development/python-modules/ldfparser/default.nix b/pkgs/development/python-modules/ldfparser/default.nix
index 42abf5cfd9a9..a73651db76fc 100644
--- a/pkgs/development/python-modules/ldfparser/default.nix
+++ b/pkgs/development/python-modules/ldfparser/default.nix
@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "ldfparser";
-  version = "0.25.0";
+  version = "0.26.0";
   pyproject = true;
 
   disabled = pythonOlder "3.7";
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     owner = "c4deszes";
     repo = "ldfparser";
     tag = "v${version}";
-    hash = "sha256-SZ9mWV5PjkQ2OiScPSMrunkKQWmuYW2lB2JvpTGNbY4=";
+    hash = "sha256-SVl/O0/2k1Y4lta+3BFkddyBZfYO2vqh4Xx1ZXNwXN4=";
   };
 
   build-system = [ setuptools ];
diff --git a/pkgs/development/python-modules/llama-cpp-python/default.nix b/pkgs/development/python-modules/llama-cpp-python/default.nix
index f534b895a69b..ec69378235e6 100644
--- a/pkgs/development/python-modules/llama-cpp-python/default.nix
+++ b/pkgs/development/python-modules/llama-cpp-python/default.nix
@@ -35,14 +35,14 @@
 }:
 buildPythonPackage rec {
   pname = "llama-cpp-python";
-  version = "0.3.5";
+  version = "0.3.6";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "abetlen";
     repo = "llama-cpp-python";
     tag = "v${version}";
-    hash = "sha256-+LBq+rCqOsvGnhTL1UoCcAwvDt8Zo9hlaa4KibFFDag=";
+    hash = "sha256-d5nMgpS7m6WEILs222ztwphoqkAezJ+qt6sVKSlpIYI=";
     fetchSubmodules = true;
   };
   # src = /home/gaetan/llama-cpp-python;
@@ -114,6 +114,9 @@ buildPythonPackage rec {
       # Current thread 0x00000001f3decf40 (most recent call first):
       #   File "/private/tmp/nix-build-python3.12-llama-cpp-python-0.3.2.drv-0/source/llama_cpp/_internals.py", line 51 in __init__
       lib.systems.inspect.patterns.isDarwin
+
+      # cc1: error: unknown value ‘native+nodotprod+noi8mm+nosve’ for ‘-mcpu’
+      "aarch64-linux"
     ];
   };
 }
diff --git a/pkgs/development/python-modules/plotpy/default.nix b/pkgs/development/python-modules/plotpy/default.nix
index 1b81c999a374..3cc4db7c59cf 100644
--- a/pkgs/development/python-modules/plotpy/default.nix
+++ b/pkgs/development/python-modules/plotpy/default.nix
@@ -4,7 +4,7 @@
   fetchFromGitHub,
 
   # build-system
-  cython_0,
+  cython,
   setuptools,
 
   # dependencies
@@ -31,18 +31,18 @@
 
 buildPythonPackage rec {
   pname = "plotpy";
-  version = "2.6.3";
+  version = "2.7.1";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "PlotPyStack";
     repo = "PlotPy";
     tag = "v${version}";
-    hash = "sha256-kMVq8X6XP18B5x35BTuC7Q5uFFwds1JxCaxlDuD/UfE=";
+    hash = "sha256-Ava3rtF/W6MdL/iaK8zbwYBCD5WFAhpzcQnHwfuXOzc=";
   };
 
   build-system = [
-    cython_0
+    cython
     setuptools
   ];
   # Both numpy versions are supported, see:
diff --git a/pkgs/development/python-modules/pycm/default.nix b/pkgs/development/python-modules/pycm/default.nix
index b560b9705cca..7d6a114c3451 100644
--- a/pkgs/development/python-modules/pycm/default.nix
+++ b/pkgs/development/python-modules/pycm/default.nix
@@ -5,54 +5,55 @@
   matplotlib,
   numpy,
   pytestCheckHook,
-  pythonOlder,
+  pytest-cov-stub,
   seaborn,
+  setuptools,
 }:
 
 buildPythonPackage rec {
   pname = "pycm";
-  version = "4.0";
-  format = "setuptools";
-
-  disabled = pythonOlder "3.5";
+  version = "4.2";
+  pyproject = true;
 
   src = fetchFromGitHub {
     owner = "sepandhaghighi";
     repo = pname;
     tag = "v${version}";
-    hash = "sha256-GyH06G7bArFBTzV/Sx/KmoJvcoed0sswW7qGqsSULHo=";
+    hash = "sha256-oceLARBP9D6NlMQiDvzIpJNNcod5D1O4xo3YzrUstso=";
   };
 
-  propagatedBuildInputs = [
+  build-system = [ setuptools ];
+
+  dependencies = [
     matplotlib
     numpy
     seaborn
   ];
 
-  nativeCheckInputs = [ pytestCheckHook ];
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-cov-stub
+    matplotlib
+  ];
 
   disabledTests = [
-    # Minor tolerance issues with Python 3.12; should be fixed in next release
-    # (see https://github.com/sepandhaghighi/pycm/pull/528)
-    "verified_test"
-    "function_test"
+    "plot_error_test" # broken doctest (expects matplotlib import exception)
   ];
 
   postPatch = ''
     # Remove a trivial dependency on the author's `art` Python ASCII art library
     rm pycm/__main__.py
-    # Also depends on python3Packages.notebook
-    rm Otherfiles/notebook_check.py
     substituteInPlace setup.py \
       --replace-fail '=get_requires()' '=[]'
   '';
 
   pythonImportsCheck = [ "pycm" ];
 
-  meta = with lib; {
+  meta = {
     description = "Multiclass confusion matrix library";
     homepage = "https://pycm.io";
-    license = licenses.mit;
-    maintainers = with maintainers; [ bcdarwin ];
+    changelog = "https://github.com/sepandhaghighi/pycm/releases/tag/${src.tag}";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ bcdarwin ];
   };
 }
diff --git a/pkgs/development/python-modules/pyedflib/default.nix b/pkgs/development/python-modules/pyedflib/default.nix
index a83fe89795b0..00552dd9eceb 100644
--- a/pkgs/development/python-modules/pyedflib/default.nix
+++ b/pkgs/development/python-modules/pyedflib/default.nix
@@ -14,14 +14,14 @@
 
 buildPythonPackage rec {
   pname = "pyedflib";
-  version = "0.1.38";
+  version = "0.1.39";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "holgern";
     repo = "pyedflib";
     tag = "v${version}";
-    hash = "sha256-sj2O5ISAy12u4GdtucLaRfOeSA6o6FJpZWTyiLq5B3U=";
+    hash = "sha256-NHjeaNLbOxTPzTbQ9owFkessQY/QnxBSC8G93JahMGg=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/pypdfium2/default.nix b/pkgs/development/python-modules/pypdfium2/default.nix
new file mode 100644
index 000000000000..1d1e9a0769b4
--- /dev/null
+++ b/pkgs/development/python-modules/pypdfium2/default.nix
@@ -0,0 +1,123 @@
+{
+  lib,
+  pkgs,
+  buildPythonPackage,
+  fetchFromGitHub,
+  fetchurl,
+  setuptools-scm,
+  pdfium-binaries,
+  numpy,
+  pillow,
+  pytestCheckHook,
+  python,
+}:
+
+let
+  pdfiumVersion = "${pdfium-binaries.version}";
+
+  headers = fetchurl {
+    url = "https://pdfium.googlesource.com/pdfium/+archive/refs/heads/chromium/${pdfiumVersion}/public.tar.gz";
+    hash = "sha256-vKfs4Jd8LEtA3aTI+DcJMS0VOErq1IR1eThnMlxiER0=";
+  };
+
+  # They demand their own fork of ctypesgen
+  ctypesgen = buildPythonPackage rec {
+    pname = "ctypesgen";
+    version = "1.1.1+g${src.rev}"; # the most recent tag + git version
+    pyproject = true;
+
+    src = fetchFromGitHub {
+      owner = "pypdfium2-team";
+      repo = "ctypesgen";
+      rev = "848e9fbb1374f7f58a7ebf5e5da5c33292480b30";
+      hash = "sha256-3JA7cW/xaEj/DxMHEypROwrKGo7EwUEcipRqALTvydw=";
+    };
+
+    build-system = [
+      setuptools-scm
+    ];
+
+    env.SETUPTOOLS_SCM_PRETEND_VERSION = "${version}";
+  };
+
+in
+buildPythonPackage rec {
+  pname = "pypdfium2";
+  version = "4.30.1";
+  pyproject = true;
+
+  src = fetchFromGitHub {
+    owner = "pypdfium2-team";
+    repo = "pypdfium2";
+    tag = version;
+    hash = "sha256-v8f/XruGJYK3H9z4Q1rLg4fEnPHa8tTOlNTBMVxPEgA=";
+  };
+
+  build-system = [
+    ctypesgen
+    setuptools-scm
+  ];
+
+  propagatedBuildInputs = [
+    pdfium-binaries
+  ];
+
+  # Build system insists on fetching from the internet unless "cached" files
+  # are prepared. Even then, some code patching needs to happen to make it not
+  # talk to the internet.
+
+  # The project doesn't seem very open to allow for offline building either,
+  # see: https://github.com/pypdfium2-team/pypdfium2/discussions/274
+  preBuild =
+    let
+      pdfiumLib = lib.makeLibraryPath [ pdfium-binaries ];
+      inputVersionFile = (pkgs.formats.json { }).generate "version.json" {
+        version = lib.strings.toInt pdfiumVersion;
+        source = "generated";
+        flags = [ ];
+        run_lds = [ pdfiumLib ];
+        guard_symbols = false;
+      };
+      bindingsDir = "data/bindings";
+      headersDir = "${bindingsDir}/headers";
+      versionFile = "${bindingsDir}/version.json";
+    in
+    ''
+      # Preseed the headers and version file
+      mkdir -p ${headersDir}
+      tar -xf ${headers} -C ${headersDir}
+      install -m 644 ${inputVersionFile} ${versionFile}
+
+      # Make generated bindings consider pdfium derivation path when loading dynamic libraries
+      substituteInPlace setupsrc/pypdfium2_setup/emplace.py \
+        --replace-fail 'build_pdfium_bindings(pdfium_ver, flags=flags, guard_symbols=True, run_lds=[])' \
+                       'build_pdfium_bindings(pdfium_ver, flags=flags, guard_symbols=True, run_lds=["${pdfiumLib}"])'
+
+      # Short circuit the version pull from the internet
+      substituteInPlace setupsrc/pypdfium2_setup/packaging_base.py \
+        --replace-fail 'PdfiumVer.to_full(build)._asdict()' \
+                       '{"major": 133, "minor": 0, "build": ${pdfiumVersion}, "patch": 1}'
+    '';
+  env.PDFIUM_PLATFORM = "system:${pdfiumVersion}";
+
+  nativeCheckInputs = [
+    numpy
+    pillow
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [
+    "pypdfium2"
+  ];
+
+  meta = {
+    changelog = "https://github.com/pypdfium2-team/pypdfium2/releases/tag/${version}";
+    description = "Python bindings to PDFium";
+    homepage = "https://pypdfium2.readthedocs.io/";
+    license = with lib.licenses; [
+      asl20 # or
+      mit
+    ];
+    maintainers = with lib.maintainers; [ booxter ];
+  };
+}
diff --git a/pkgs/development/python-modules/python-gvm/default.nix b/pkgs/development/python-modules/python-gvm/default.nix
index e091431b61f8..78dc4ea0b84a 100644
--- a/pkgs/development/python-modules/python-gvm/default.nix
+++ b/pkgs/development/python-modules/python-gvm/default.nix
@@ -15,7 +15,7 @@
 
 buildPythonPackage rec {
   pname = "python-gvm";
-  version = "24.12.0";
+  version = "25.1.1";
   pyproject = true;
 
   disabled = pythonOlder "3.9";
@@ -24,7 +24,7 @@ buildPythonPackage rec {
     owner = "greenbone";
     repo = "python-gvm";
     tag = "v${version}";
-    hash = "sha256-6K9Gv2ycQuCeH5GxtRfpwRqTQxpuqRZC82EvQCFSX4k=";
+    hash = "sha256-z78JnyAyWqNqFGuauIXitPO0D0WtHicBlD6Jno4G74Y=";
   };
 
   build-system = [ poetry-core ];
diff --git a/pkgs/development/python-modules/pythonqwt/default.nix b/pkgs/development/python-modules/pythonqwt/default.nix
index 818afbe3932e..76f7a5031223 100644
--- a/pkgs/development/python-modules/pythonqwt/default.nix
+++ b/pkgs/development/python-modules/pythonqwt/default.nix
@@ -18,14 +18,14 @@
 
 buildPythonPackage rec {
   pname = "pythonqwt";
-  version = "0.14.2";
+  version = "0.14.4";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "PlotPyStack";
     repo = "PythonQwt";
     tag = "v${version}";
-    hash = "sha256-8bhcfm4sPA32IpEcS4Z12nfNgfmWJUDxDjX1TULWwCU=";
+    hash = "sha256-ZlrnCsC/is4PPUbzaMfwWSHQSQ06ksb2b/dkU8VhtSU=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/rocketchat-api/default.nix b/pkgs/development/python-modules/rocketchat-api/default.nix
index d10f94d72f31..0175c3b2cd8f 100644
--- a/pkgs/development/python-modules/rocketchat-api/default.nix
+++ b/pkgs/development/python-modules/rocketchat-api/default.nix
@@ -9,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "rocketchat-api";
-  version = "1.34.0";
+  version = "1.35.0";
   pyproject = true;
 
   src = fetchFromGitHub {
     owner = "jadolg";
     repo = "rocketchat_API";
     tag = version;
-    hash = "sha256-ny/VybQDZFB4ZxHEnDP2IeYsHjgO9pAk4r0vpX+hWVE=";
+    hash = "sha256-lbYOsh+QiQdbASOyi2E/VAziI2LU7x9zSe1qHJdiQa4=";
   };
 
   build-system = [ setuptools ];
@@ -36,6 +36,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = {
+    changelog = "https://github.com/jadolg/rocketchat_API/releases/tag/${src.tag}";
     description = "Python API wrapper for Rocket.Chat";
     homepage = "https://github.com/jadolg/rocketchat_API";
     license = lib.licenses.mit;
diff --git a/pkgs/development/python-modules/typst/default.nix b/pkgs/development/python-modules/typst/default.nix
index 3c0d3422883b..39cf7728077c 100644
--- a/pkgs/development/python-modules/typst/default.nix
+++ b/pkgs/development/python-modules/typst/default.nix
@@ -25,10 +25,10 @@ buildPythonPackage rec {
     hash = "sha256-VgQbMeyvXjzE8jSaGLygIy8EhR23MpqjlU68FsBZq6E=";
   };
 
-  cargoDeps = rustPlatform.fetchCargoTarball {
+  cargoDeps = rustPlatform.fetchCargoVendor {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-H7lKoSDSx0cGH+VsIX90KaiWJw1h/BokNdKzxmvm6XQ=";
+    hash = "sha256-OHJQlGwgaQ2ELWvjaA8qsuXOQGSdgirK/yTff7POOmE=";
   };
 
   build-system = [
diff --git a/pkgs/development/python-modules/unstructured/default.nix b/pkgs/development/python-modules/unstructured/default.nix
index e9eed5709877..eac7e5e04224 100644
--- a/pkgs/development/python-modules/unstructured/default.nix
+++ b/pkgs/development/python-modules/unstructured/default.nix
@@ -113,7 +113,7 @@
   grpcio,
 }:
 let
-  version = "0.16.13";
+  version = "0.16.15";
 in
 buildPythonPackage {
   pname = "unstructured";
@@ -124,7 +124,7 @@ buildPythonPackage {
     owner = "Unstructured-IO";
     repo = "unstructured";
     tag = version;
-    hash = "sha256-VVgSrXqfWEOjZAU54rGBW3m4FxZKJDmbFsWdgjiqMSs=";
+    hash = "sha256-Wp51LOgM/zE81324Qzu83XGupUMAzz2wn+COmNq95H8=";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/wandb/default.nix b/pkgs/development/python-modules/wandb/default.nix
index 1a66aab57537..3f806069806b 100644
--- a/pkgs/development/python-modules/wandb/default.nix
+++ b/pkgs/development/python-modules/wandb/default.nix
@@ -90,7 +90,8 @@ let
 
     sourceRoot = "${src.name}/gpu_stats";
 
-    cargoHash = "sha256-4udGG4I2Hr8r84c4WX6QGG/+bcHK4csXqwddvIiKmkw=";
+    useFetchCargoVendor = true;
+    cargoHash = "sha256-eeL486wQappwWG1De+RUIWe8JuBDx0clyU79eyZmf8M=";
 
     buildInputs = lib.optionals stdenv.hostPlatform.isDarwin [
       darwin.apple_sdk.frameworks.IOKit