nixos/nixpkgs.git/pkgs/development/perl-modules/Bio-Ext-Align/fprintf.patch, branch master Nix Packages collection perlPackages.BioExtAlign: bug fix and add test 2025-02-13T22:35:53+00:00 Alexis Praga alexis@praga.dev 2025-02-08T10:35:15+00:00 386d93d06d1789d1bdfbd944afbe285213cb4ce8 Bug: with perl > 5.36, the compiler is more restrictive with errors. This package has implicit function definitions. The fix is to ignore the errors as vep, the main package for that, runs without issue. Also this package is no longer maintained We also add test that were missing from the package. Not all test can be run as they depends on other Perl modules in Bioper. 
Bug: with perl > 5.36, the compiler is more
restrictive with errors. This package has implicit
function definitions. The fix is to ignore the
errors as vep, the main package for that, runs
without issue. Also this package is no longer
maintained

We also add test that were missing from the package.
Not all test can be run as they depends on
other Perl modules in Bioper.
bioextalign: init at 1.5.1 2022-10-20T21:18:32+00:00 Alexis Praga alexis.praga@free.fr 2022-08-13T16:49:20+00:00 02ff423121c4a3dc62edc4c51b2a48f03e95598f Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions. These are no longer maintained but needed for Ensembl-VEP (annotation for genomics). Co-authored-by: Sandro <sandro.jaeckel@gmail.com> 
Part of BioPerl Extensions (BioPerl-Ext) distribution, a collection of Bioperl C-compiled extensions. These are no longer maintained but needed for Ensembl-VEP (annotation
for genomics).

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>